# biology/vcf-split - The NetBSD Packages Collection

Split a multi-sample VCF into single-sample VCFs

    Vcf-split splits a multi-sample VCF into single-sample VCFs, writing thousands
    of output files simultaneously.  Parsing the TOPMed human chromosome 1 BCF
    with bcftools takes two days, so extracting the 137,977 samples one at a time
    or using thousands of parallel readers of the same file is impractical.
    Vcf-split solves this by generating thousands of single-sample outputs during
    a single sweep through the multi-sample input.

- Source version: `vcf-split-0.1.5.19`
- Maintainer: bacon AT NetBSD.org
- Website: https://github.com/auerlab/vcf-split
- License: 2-clause-bsd
- Package history: cvs, hg, git

## Build dependencies

pkgtools/mktools pkgtools/cwrappers

## Runtime dependencies

biology/biolibc

## Binary packages

OS | Architecture | Version
--- | --- | ---
NetBSD 10.0 | aarch64 | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | aarch64 | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | aarch64eb | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | alpha | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | earmv4 | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | earmv4 | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | earmv6hf | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | earmv6hf | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | earmv7hf | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | earmv7hf | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | i386 | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | i386 | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | m68k | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | m68k | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | powerpc | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | powerpc | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | powerpc | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | sh3el | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | sparc64 | vcf-split-0.1.5.10.tgz
NetBSD 10.0 | sparc64 | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | sparc64 | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | vax | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | x86_64 | vcf-split-0.1.5.19.tgz
NetBSD 10.0 | x86_64 | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | aarch64 | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | aarch64 | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | aarch64eb | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | aarch64eb | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | earmv4 | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | earmv4 | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | earmv4 | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | earmv6hf | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | earmv6hf | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | earmv7hf | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | earmv7hf | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | i386 | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | i386 | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | m68k | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | m68k | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | powerpc | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | powerpc | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | riscv64 | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | riscv64 | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | riscv64 | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | sh3el | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | sh3el | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | vax | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | vax | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | x86_64 | vcf-split-0.1.5.19.tgz
NetBSD 11.0 | x86_64 | vcf-split-0.1.5.19.tgz
NetBSD 9.0 | aarch64 | vcf-split-0.1.5.19.tgz
NetBSD 9.0 | aarch64 | vcf-split-0.1.5.19.tgz
NetBSD 9.0 | earmv6hf | vcf-split-0.1.5.19.tgz
NetBSD 9.0 | earmv6hf | vcf-split-0.1.5.19.tgz
NetBSD 9.0 | earmv7hf | vcf-split-0.1.5.19.tgz
NetBSD 9.0 | earmv7hf | vcf-split-0.1.5.19.tgz
NetBSD 9.0 | i386 | vcf-split-0.1.5.19.tgz
NetBSD 9.0 | i386 | vcf-split-0.1.5.19.tgz
NetBSD 9.0 | m68k | vcf-split-0.1.5.19.tgz
NetBSD 9.0 | powerpc | vcf-split-0.1.5.19.tgz
NetBSD 9.0 | x86_64 | vcf-split-0.1.5.19.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

## Available build options

(none)

## Known vulnerabilities

(no vulnerabilities known)

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.